mRNA MFE scatter catalog — Knotty / ViennaRNA / DeRNA

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Pairwise Knotergy-MFE scatter plots of the three folds. Each card switches between the pairings and Compare (all three); the toolbar toggles PK-mixed vs PK-only. All energies are Knotergy (Dirks-Pierce09, kcal/mol): Knotty=e_pk, ViennaRNA=e_nested, DeRNA computed. Red dashed line = y=x (equal energy); arrows mark the region where each fold reaches the lower (more stable) energy, with the majority region emphasised.

Population: non-PKPK
AA length 20 · 1000 structures 149 PK / 851 non-PK
AA length 20 · 100 structures (subset) 15 PK / 85 non-PK
AA length 60 · 99 structures 6 PK / 93 non-PK
All pseudoknotted · AA length 4–60 823 PK