mRNA Secondary Structure Catalog

Secondary structures of DeRNA mRNAs. Every card has a top bar to switch between the Knotty, ViennaRNA and DeRNA fold, plus Compare (all three side by side); all MFEs are Knotergy energies (apple-to-apple). Sort by AA length, base pairs, MFE, or PK pairs; each card lists the protein sequence (toggle-able).

AA length 20 · 1000 structures
149 PK / 851 non-PK · switchable Knotty / ViennaRNA / DeRNA + Compare AA length 20 · 100 structures
15 PK / 85 non-PK · a smaller quick-look subset of the 1000 AA length 60 · 99 structures
6 PK / 93 non-PK · switchable Knotty / ViennaRNA / DeRNA + Compare All pseudoknotted structures · AA length 4–60
823 structures · switchable Knotty / ViennaRNA / DeRNA + Compare 📈 MFE scatter plots (Knotty / ViennaRNA / DeRNA)
pairwise Knotergy-MFE scatter per population · switch pairing + Compare · PK-mixed / PK-only